2019 · Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · paywalled
Comparison of Oral Collection Methods for Studies of Microbiota
Vogtmann et al.
The finding, in our words
Oral rinse samples collected in Scope mouthwash remained stable at ambient temperature for four days, with high intraclass correlation for microbial diversity (Shannon index ICC 0.86), supporting their use in decentralised microbiome studies. However, comparability with OMNIgene ORAL samples was low, suggesting collection methods should not be mixed within a study.
A paraphrase to the Library’s standard, never the abstract. The source is one link away and is always the authority.
Saliva samples collected using the OMNIgene ORAL device and oral wash samples remain stable for microbiome diversity and relative abundance analyses for up to five years when stored at -80°C. This supports the use of these self-collection methods for long-term prospective biobanking and decentralised clinical studies.
Slack et al., Microbiology spectrum (paywalled) · source ↗
Across 18 saliva samples, mouthwash collection gave higher alpha diversity than passive drooling on both Illumina and Nanopore platforms, and three preservation methods performed alike; mouthwash and simple collection are convenient decentralised options, provided a study keeps one collection method for all participants to avoid confounding.
This study compared OMNIgene Gut tubes and FTA cards for stool collection in a deployed setting, finding that OMNIgene yielded higher nucleic acid concentrations while both methods detected the majority of microbial genera. The authors conclude that distinct microbial abundance profiles between the two methods necessitate standardised protocols for field research.
This study compared two preservatives for stool samples and found that OMNIgene GUT OMR-200 produced less variation in metagenomic taxonomic data across different storage temperatures, supporting its use in decentralised field studies. The authors recommend absolute quantification to address bias in microbial measurements.
Maghini et al., Nature biotechnology (paywalled) · source ↗
In children, stool preserved in OMNIgene-GUT kept its microbial community structure better than unpreserved stool, with alpha and beta diversity similar to direct freezing, which supports the kit for decentralised stool collection from children.